PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872104.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 254aa MW: 29119.6 Da PI: 7.2185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.5e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl XP_023872104.1 14 KGAWSLEEDNKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	58.5	1.5e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEde++++++++lG++ W++Ia+++ gRt++++k++w+++l XP_023872104.1 67 RGKYTKEEDEKIIKLHQELGNK-WSKIAAKLA-GRTDNEIKNHWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MVKAPYYDKN GVKKGAWSLE EDNKLRAYVQ RYGHWNWREL PKFAGLSRCG KSCRLRWMNY 60 LRPDVKRGKY TKEEDEKIIK LHQELGNKWS KIAAKLAGRT DNEIKNHWHT HLKKRAKENQ 120 VSSEVKEHPS DISQCETISR NRDSEAESVP GNAPSRLILE SSPLSPETSS SYFSTLSSHH 180 QAPPPPSGIN QIAEEGVASS ETFDEFIGDF WTEPFVADNT FFQNSCPLSL LNRGLISPCV 240 SYYDDDIDLF YQVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	8e-57	MYB family protein