PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872109.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

FAR1

Protein Properties

Length: 488aa MW: 52843.2 Da PI: 8.0042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.6e-17	60	146	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++A++ GF + +++s+ + ++g+ t+ C + gkre++ kk + + r++ +t+Ckak++v + +dgk+++ ++ leHnHel+p XP_023872109.1 60 NYYSKFAQREGFGIYRRSSRCR-DDGKLNYFTLACARAGKRESTAKK---KFSLRQSPKTNCKAKVNVALGSDGKFHLCHVILEHNHELSP 146 69***********9987775.9999************9888...889999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEGDSMVNVT LENDNQGSSC DKERVDGDKV EEHNVGGLGN EEVETPRAGM VFVSPEEVRN 60 YYSKFAQREG FGIYRRSSRC RDDGKLNYFT LACARAGKRE STAKKKFSLR QSPKTNCKAK 120 VNVALGSDGK FHLCHVILEH NHELSPGMFH SNRCKKSGGP RAQRRSKAKD PAEAIVHQDC 180 PSLVGVAASC EIIPSVEGVN VTKQLANGDK HHLFPNTGHP TSESTLNHLK RRSSALENSQ 240 NSQDVFKLAL AKKAVELVKS GMVIGLGTGG TSLLMEELGK LIGEGKLKDI VAVGANYHSR 300 LLAKQFGLRT VDLNDVDNID IVFDGVDEVD FNKNLLKGGE AAHTVQKVVY SMANVCIILA 360 EHTKVVHRLG SKFPVAVEVL PLATSPVSRR LIALGGVPEI RSALRKDGPV ITDLGNMIID 420 VSFPNGIQNP AELEKNINVI PGVVDNGIVS GVATSVLVAV RDGGHVNVMN LEEFVEVVLG 480 WRYATSTL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEGDSMVNVT LENDNQGSSC DKERVDGDKV EEHNVGGLGN EEVETPRAGM VFVSPEEVRN  60
YYSKFAQREG FGIYRRSSRC RDDGKLNYFT LACARAGKRE STAKKKFSLR QSPKTNCKAK  120
VNVALGSDGK FHLCHVILEH NHELSPGMFH SNRCKKSGGP RAQRRSKAKD PAEAIVHQDC  180
PSLVGVAASC EIIPSVEGVN VTKQLANGDK HHLFPNTGHP TSESTLNHLK RRSSALENSQ  240
NSQDVFKLAL AKKAVELVKS GMVIGLGTGG TSLLMEELGK LIGEGKLKDI VAVGANYHSR  300
LLAKQFGLRT VDLNDVDNID IVFDGVDEVD FNKNLLKGGE AAHTVQKVVY SMANVCIILA  360
EHTKVVHRLG SKFPVAVEVL PLATSPVSRR LIALGGVPEI RSALRKDGPV ITDLGNMIID  420
VSFPNGIQNP AELEKNINVI PGVVDNGIVS GVATSVLVAV RDGGHVNVMN LEEFVEVVLG  480
WRYATSTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.2	1e-11	FAR1 family protein