PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872279.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 724aa MW: 78523.5 Da PI: 6.1204

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.5	8.9e-15	301	360	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023872279.1 301 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 360 57*****************666664478446***********************98 PP
2	AP2	46.6	8.3e-15	403	454	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023872279.1 403 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 454 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MASMNWLGFS LSPQELPSQP SDQDHSQNAV SRLGFNSDDI SGTDVSGECF DLTSDSTPPS 60 LNLPPPFGIL EAFNRNNQPQ DWNMKSLGMN SSANYKTTSD LSMLMGSSCS SQSLENQDHQ 120 PKLENFLGRH SFGHHDQSTA YNNTTGDYMF NNCSLQLPSE ATNGVSNSTA GDGGSGSGNG 180 SINNNSSIGL SMIKTWLRNQ PAPQTQQDNN TNKNDGGASG GGNNGSLTSA QTLSLSMSTG 240 SQSSSTLPLL TASTAGGGSG GESSSSDNNK QPNATTGLDS QTGAIEAVPR KSIDTFGQRT 300 SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG 360 TTTTTNFPIS NYEKELEEMK HMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR 420 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESSTLPIG 480 GAAKRLKDVE QAEMTVDGQR TDDHDNVSSQ LTDGINNYGG APHHGWPTLA FQQAQPYSMH 540 YPYGQRIWCK QEQDSDPPHS FQDLHQLQLG NTHNFFQPNS VLHNLMGMES ASMEHSSGSN 600 SVIYSNGGGA TVDGYGSNGG YIMPLTTVIA NEDNIQNQGN NGFGDGEVKA LGYDNVFAST 660 DPYHARNLYY LSQQSSTGVV KASTYDQGSA CNNWVPTAVP TLAPRSNNMA VCHGAPTFTV 720 WNDT

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MASMNWLGFS LSPQELPSQP SDQDHSQNAV SRLGFNSDDI SGTDVSGECF DLTSDSTPPS  60
LNLPPPFGIL EAFNRNNQPQ DWNMKSLGMN SSANYKTTSD LSMLMGSSCS SQSLENQDHQ  120
PKLENFLGRH SFGHHDQSTA YNNTTGDYMF NNCSLQLPSE ATNGVSNSTA GDGGSGSGNG  180
SINNNSSIGL SMIKTWLRNQ PAPQTQQDNN TNKNDGGASG GGNNGSLTSA QTLSLSMSTG  240
SQSSSTLPLL TASTAGGGSG GESSSSDNNK QPNATTGLDS QTGAIEAVPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  360
TTTTTNFPIS NYEKELEEMK HMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  420
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESSTLPIG  480
GAAKRLKDVE QAEMTVDGQR TDDHDNVSSQ LTDGINNYGG APHHGWPTLA FQQAQPYSMH  540
YPYGQRIWCK QEQDSDPPHS FQDLHQLQLG NTHNFFQPNS VLHNLMGMES ASMEHSSGSN  600
SVIYSNGGGA TVDGYGSNGG YIMPLTTVIA NEDNIQNQGN NGFGDGEVKA LGYDNVFAST  660
DPYHARNLYY LSQQSSTGVV KASTYDQGSA CNNWVPTAVP TLAPRSNNMA VCHGAPTFTV  720
WNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-133	AP2 family protein