PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023872463.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11636.7 Da    PI: 10.5128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023872463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-272373151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA ELS+LCdae+a+i+fs tgkl++y+s
  XP_023872463.1 23 KKIDNTTARQVTFSKRRRGLFKKACELSTLCDAEIALIVFSATGKLFDYAS 73
                    68***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MYYIAKGLIT YPGKMTRKKI QIKKIDNTTA RQVTFSKRRR GLFKKACELS TLCDAEIALI  60
VFSATGKLFD YASSSIQQVI ERHNLHPNNL GKMDKLSLEL QV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-43MIKC_MADS family protein