PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023872515.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24864.4 Da    PI: 6.3043
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023872515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCda++a+++fs tg+l+ey+s
  XP_023872515.1  9 KKIDNTTARQVTFSKRRRGLFKKAFELSTLCDADIALMVFSATGNLFEYAS 59
                    68***********************************************86 PP
2K-box42.72.5e-15911701897
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++ ++ L  eie+  re+R+++Ge+L+ ++++eLq+Le+ Le +l+++ ++K e +le+i  l++k  +l  en++L+++
  XP_023872515.1  91 STSYTMLSMEIEEKTRELRKIKGEELNGMDIEELQKLEKVLEVGLSRVLETKGERFLEEITVLKRKGAQLMAENQRLKQM 170
                     566788889999999**************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MTRKKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSTLCD ADIALMVFSA TGNLFEYASS  60
SMQQVIERHN LHAENLGKMD QPSLELQLEN STSYTMLSME IEEKTRELRK IKGEELNGMD  120
IEELQKLEKV LEVGLSRVLE TKGERFLEEI TVLKRKGAQL MAENQRLKQM ENMFSTQTHV  180
LEQGQSSESI SNICNSSDPP QDNDSSDTSL KLGLPFPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-69MIKC_MADS family protein