PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023872548.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29704.8 Da    PI: 9.214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023872548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.2e-281058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ri+n++ rqvtfskRrng+lKKA ELS+LCdaev viifsst klyey+
  XP_023872548.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYEYA 58
                    8***********************************************8 PP
2K-box81.81.6e-2778169699
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + s+ +++ + +q+e+a+L ++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+ K  ll+++i+el +k + +++en++L +k+e
  XP_023872548.1  78 QPSNPATDVKFWQREAANLSQQLKYLQECHRQLMGEELSGLSVKDLQNLENQLEMSLKGVRASK--LLTDEIKELNQKGHLIHQENTELYTKIE 169
                     334678899****************************************************986..9************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGVIIFSS TSKLYEYANT  60
SLKSVIGRYS KAKEDQHQPS NPATDVKFWQ REAANLSQQL KYLQECHRQL MGEELSGLSV  120
KDLQNLENQL EMSLKGVRAS KLLTDEIKEL NQKGHLIHQE NTELYTKIEH FRKENAELKK  180
KVYRARNVNE ASCSSAPYTI SNEYDLHANI RLQLSQPQPQ NDEEPEKAME LGYLLNLLTC  240
YTQFKSFKEI ISYINSTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.16e-91MIKC_MADS family protein