PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872634.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 547aa MW: 59294.2 Da PI: 5.5159

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	363	405	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_023872634.1 363 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 405 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MLPRATNGAV WTEGGGGEEE DTASWNRTSN NNEGEAHKDE DNNMGVLSGP LSSFKSMLEN 60 EWYINSALNP SHQELHLHGL PNPQDVRDIG FCSNPSDNNS LLLHPLDSSS SCSPSQAFTH 120 PFLPQKSCFS SLVNAVCTNP FDNAFDLGLE TGLLGPFNPG GSASNCSALM GFAGLSSQIG 180 GHELSSTSEF QQPTRLLPLS DNSAGLGGGF SPAGLEGFDN DNSVSGSALF LNRGKALRPL 240 EVFPQVGTQP TLFQKRAALR HGAEKLGNLE ISGGRYGENS EEDMEKRGRR KKKSSEECDF 300 EEGSLDVSGL NYDSDDFNEN ENSIGKMEGN VQIGRSNSNA NSTVTGGGDQ KGKKKGLPAK 360 NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHNELESTP 420 PGSLLPSSTS FHSLTPTPPT LPSRVKEELC PSSLPSPKSQ PTRVEVRVRE GRAVNIHMFC 480 ARRPGLLLST MRALDNLGLD IQQAVISCFN GFALDVFRAE QCREGQDVLP EQIKAVLLDS 540 AGFHGMM

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MLPRATNGAV WTEGGGGEEE DTASWNRTSN NNEGEAHKDE DNNMGVLSGP LSSFKSMLEN  60
EWYINSALNP SHQELHLHGL PNPQDVRDIG FCSNPSDNNS LLLHPLDSSS SCSPSQAFTH  120
PFLPQKSCFS SLVNAVCTNP FDNAFDLGLE TGLLGPFNPG GSASNCSALM GFAGLSSQIG  180
GHELSSTSEF QQPTRLLPLS DNSAGLGGGF SPAGLEGFDN DNSVSGSALF LNRGKALRPL  240
EVFPQVGTQP TLFQKRAALR HGAEKLGNLE ISGGRYGENS EEDMEKRGRR KKKSSEECDF  300
EEGSLDVSGL NYDSDDFNEN ENSIGKMEGN VQIGRSNSNA NSTVTGGGDQ KGKKKGLPAK  360
NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHNELESTP  420
PGSLLPSSTS FHSLTPTPPT LPSRVKEELC PSSLPSPKSQ PTRVEVRVRE GRAVNIHMFC  480
ARRPGLLLST MRALDNLGLD IQQAVISCFN GFALDVFRAE QCREGQDVLP EQIKAVLLDS  540
AGFHGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	371	KKKGLPAKNLMAERRRRKK
2	365	372	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-120	bHLH family protein