PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023872840.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 715aa MW: 79549.1 Da PI: 5.9016

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023872840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	484	530	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_023872840.1 484 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 530 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQL CPQQGILVWA DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGAG 120 LPGKAYSRRQ HVWLTGANDV DSKTFSRAIL AKSARVQTVV CIPLLDGVVE LGTTDKVQED 180 LAFVQHIQSF FTEHHQHNPQ PPKPALSEHS TSNPASSSGH TRFHSPPVPP VYTSADPPIN 240 AEEEEEEEEE DEEEEDEGGE SDSEVETGRN GRPIAMAMAV QNPHAIATTD QPSELMQLEM 300 SEDIRLGSPD DASNNLDSDF HMLAVTQSGN PIADHHHHHQ RRADSYRGES APRWPMVQEP 360 TSSGIQIRPP SSGGTPPLDD LTQEDTHYSQ TVSTILQTQP RWATDSSTYI PYSNQSAFAK 420 WTIRVDHHLQ VPLEGTSQWL LKYILFSVPL LHTKYRDENS PKLRDGDVAT RFKKGTPQDE 480 LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLETRN 540 RQMEVDQRSR STGDLQRSSS LKDLRATTSG VTSDRTRAGL SGVDKRKLRI VEGSGGVAKS 600 KMVVESPPPP PPPPPPPPPP SSPPATPTGT SVEVSIIESQ GLLELQCPYK EGLLLDIMQK 660 LRELRIETTT VQSSLNNGFF VAELRAKVKE NVNGKKTSIV EVKRAINQII PHTDS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQL CPQQGILVWA DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGAG  120
LPGKAYSRRQ HVWLTGANDV DSKTFSRAIL AKSARVQTVV CIPLLDGVVE LGTTDKVQED  180
LAFVQHIQSF FTEHHQHNPQ PPKPALSEHS TSNPASSSGH TRFHSPPVPP VYTSADPPIN  240
AEEEEEEEEE DEEEEDEGGE SDSEVETGRN GRPIAMAMAV QNPHAIATTD QPSELMQLEM  300
SEDIRLGSPD DASNNLDSDF HMLAVTQSGN PIADHHHHHQ RRADSYRGES APRWPMVQEP  360
TSSGIQIRPP SSGGTPPLDD LTQEDTHYSQ TVSTILQTQP RWATDSSTYI PYSNQSAFAK  420
WTIRVDHHLQ VPLEGTSQWL LKYILFSVPL LHTKYRDENS PKLRDGDVAT RFKKGTPQDE  480
LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLETRN  540
RQMEVDQRSR STGDLQRSSS LKDLRATTSG VTSDRTRAGL SGVDKRKLRI VEGSGGVAKS  600
KMVVESPPPP PPPPPPPPPP SSPPATPTGT SVEVSIIESQ GLLELQCPYK EGLLLDIMQK  660
LRELRIETTT VQSSLNNGFF VAELRAKVKE NVNGKKTSIV EVKRAINQII PHTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	494	ERRRRE
2	490	495	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-106	bHLH family protein