PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873229.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LSD

Protein Properties

Length: 174aa MW: 18369.3 Da PI: 8.431

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.4	9.9e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC+tV XP_023873229.1 7 CNGCRSVLLYPGGATNVCCALCNTV 31 ************************9 PP
2	zf-LSD1	38	2.7e-12	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r A+sVRC++C tV XP_023873229.1 44 CAGCRTLLMYTRAATSVRCSCCSTV 68 ***********************99 PP
3	zf-LSD1	46.7	5e-15	82	106	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V XP_023873229.1 82 CGSCRTMLMYPYGAPSVKCAVCHYV 106 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MQSQLVCNGC RSVLLYPGGA TNVCCALCNT VTPVPGTEMA QLVCAGCRTL LMYTRAATSV 60 RCSCCSTVNL APVPTQYAHV NCGSCRTMLM YPYGAPSVKC AVCHYVTNVG MANARLPIPM 120 HRPNGTAYSG TTPSTSTSMP YSQSQTVVVE NPRTIDESGK LVSNVVVGVT TDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	9e-67	LSD family protein