PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873456.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 310aa MW: 34899.9 Da PI: 8.0591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	119	170	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ + L++++P + + ++ + a+iL A++++k+L+ XP_023873456.1 119 QRMTHIDVERNRRKQMNDYLTVLKSMMPAS---YVQRGDQASILGGAINFVKELE 170 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MTLEAVVFQQ DSFNNGCRDI YALGAGGTWS YGLGLKEDKV YFEKLGNNVE QVSIANSESL 60 PSSMVQGVKE RDANTASPDN CTITDRGFLA QEVPAAATMG RRKRRRIRRT KNKEEMENQR 120 MTHIDVERNR RKQMNDYLTV LKSMMPASYV QRGDQASILG GAINFVKELE QLLQSMEAQK 180 GIKQRLDNSL SSGLFSGFFT LPQYTCSNES SESMMEKRSA IADIEVTMVE SHANIKILSR 240 KHPKQLLKMV AALQSLHLIV LHLNVTTVDN MVLYSFSVKV EDYSKLTSVN EIAAAVYEMM 300 GWIQQEVQFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	RRKRRRIRR
2	102	106	RKRRR
3	103	107	KRRRI
4	120	131	RMTHIDVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-67	bHLH family protein