PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873877.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 358aa MW: 40499.6 Da PI: 7.018

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.2	6.3e-16	45	105	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g+ XP_023873877.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNElqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 105 57*****************999966755446***********************997 PP
2	AP2	51.2	3e-16	147	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_023873877.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 198 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MAKRSVKNTA NANNNTNTNT NNPATTKAKR TRKSIPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ELQNKKGRQV YLGAYDDEEA AAHAYDLAAL KYWGHDTILN FQLSTYEEEL 120 KEMESQSKEE YIGCLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLRPDNNQ NNPNNHEPNS NDDLNPIIIP 240 NPNNELGLSF ISQQASSSAS DTPQAPPPIR PGGGVASASS ALGLLLQSSK FKEMMERTSV 300 IDNPSIPQES DPPRRTFPDD IQTYFDCQDS GSYTEGDDII FGDINSFATP IFHYELEP

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MAKRSVKNTA NANNNTNTNT NNPATTKAKR TRKSIPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ELQNKKGRQV YLGAYDDEEA AAHAYDLAAL KYWGHDTILN FQLSTYEEEL  120
KEMESQSKEE YIGCLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLRPDNNQ NNPNNHEPNS NDDLNPIIIP  240
NPNNELGLSF ISQQASSSAS DTPQAPPPIR PGGGVASASS ALGLLLQSSK FKEMMERTSV  300
IDNPSIPQES DPPRRTFPDD IQTYFDCQDS GSYTEGDDII FGDINSFATP IFHYELEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-89	AP2 family protein