PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873878.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 355aa MW: 40124.1 Da PI: 7.0182

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	45	102	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g+ XP_023873878.1 45 SIYRGVTRHRWTGRYEAHLWDkNCWNElQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 102 57*****************99999999988888******************997 PP
2	AP2	51.2	3e-16	144	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_023873878.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MAKRSVKNTA NANNNTNTNT NNPATTKAKR TRKSIPRDSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ELQNKKGRQG AYDDEEAAAH AYDLAALKYW GHDTILNFQL STYEEELKEM 120 ESQSKEEYIG CLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPDNNQNNP NNHEPNSNDD LNPIIIPNPN 240 NELGLSFISQ QASSSASDTP QAPPPIRPGG GVASASSALG LLLQSSKFKE MMERTSVIDN 300 PSIPQESDPP RRTFPDDIQT YFDCQDSGSY TEGDDIIFGD INSFATPIFH YELEP

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MAKRSVKNTA NANNNTNTNT NNPATTKAKR TRKSIPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ELQNKKGRQG AYDDEEAAAH AYDLAALKYW GHDTILNFQL STYEEELKEM  120
ESQSKEEYIG CLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPDNNQNNP NNHEPNSNDD LNPIIIPNPN  240
NELGLSFISQ QASSSASDTP QAPPPIRPGG GVASASSALG LLLQSSKFKE MMERTSVIDN  300
PSIPQESDPP RRTFPDDIQT YFDCQDSGSY TEGDDIIFGD INSFATPIFH YELEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-85	AP2 family protein