PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023873934.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 398aa MW: 44991.3 Da PI: 4.791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023873934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2e-24	287	371	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W + ev+aLi++r+ +e+++r + +++ Wee+s + g++rs+k+Ckekw+n+nk++++ e+ kk+ + + + c+yf++l+ XP_023873934.1 287 KWLEAEVQALITLRTTLEHKFRPTGSRGSIWEEISVELYNMGYNRSAKKCKEKWDNMNKYFRRSMESGKKH-AANGKACQYFHDLN 371 7*******************************************************************9.556669***995 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGGFTGDGEI PCPGEPFHGH VAPFPDTAEL IYANPPPAIN FSPVELIPQR HSLPPQKLRP 60 IRRSPPESYE IPEPTLAGTL ATCSAEEEDA GFLAAGKEVC AVNRLAGDGD GECFETPKRV 120 GSGTCCWGPN DEVRVFDELE AESSSSSDED DDDDDDFTSA NINEPINRKR KRKPSEKLKG 180 FLESLVAKVM ERQERMHKEL MEVIEKREQE RRIREEAWRQ QEMERMKREE EVRAQEMSSS 240 LAFVSLIQNI LGDEIQVPQP LITRCKEEDG GEIGMQNEVK CDPNNKKWLE AEVQALITLR 300 TTLEHKFRPT GSRGSIWEEI SVELYNMGYN RSAKKCKEKW DNMNKYFRRS MESGKKHAAN 360 GKACQYFHDL NILYGNGLIN PGNNVKNANT ENEAKSEN

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGGFTGDGEI PCPGEPFHGH VAPFPDTAEL IYANPPPAIN FSPVELIPQR HSLPPQKLRP  60
IRRSPPESYE IPEPTLAGTL ATCSAEEEDA GFLAAGKEVC AVNRLAGDGD GECFETPKRV  120
GSGTCCWGPN DEVRVFDELE AESSSSSDED DDDDDDFTSA NINEPINRKR KRKPSEKLKG  180
FLESLVAKVM ERQERMHKEL MEVIEKREQE RRIREEAWRQ QEMERMKREE EVRAQEMSSS  240
LAFVSLIQNI LGDEIQVPQP LITRCKEEDG GEIGMQNEVK CDPNNKKWLE AEVQALITLR  300
TTLEHKFRPT GSRGSIWEEI SVELYNMGYN RSAKKCKEKW DNMNKYFRRS MESGKKHAAN  360
GKACQYFHDL NILYGNGLIN PGNNVKNANT ENEAKSEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	3e-37	Trihelix family protein