PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023874115.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB_related
Protein Properties Length: 114aa    MW: 12866 Da    PI: 11.113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023874115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10751144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44
                     r++W+++Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw
   XP_023874115.1  7 RKPWSEDEDLELIAAVQKCGEGNWANILRGDFkGDRTATQLSQRW 51
                     79*************************984223589999998888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    
MPLRRKRKPW SEDEDLELIA AVQKCGEGNW ANILRGDFKG DRTATQLSQR WAIIRKRRGI  60
LNVGTNPSGS QLSEERRAAH HAISLALMPV KSLTAARPGN LFSILIYLTL LKYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139LRRKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.24e-29MYB_related family protein