PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023874761.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25462.8 Da    PI: 6.5247
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023874761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-183788556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++f++eq++ Le +Fe+++ p  +++++LA++lgL  rqV +WFqNrRa+ k
  XP_023874761.1 37 QRFNDEQIKLLEIMFEEESRPESRTKQKLANELGLHPRQVATWFQNRRARLK 88
                    78************************************************98 PP
2HD-ZIP_I/II101.76.2e-3336126393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +r+++eq+klLE +Feee++ e++ K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ Lk++yd+l+++ e+L++e++ L  +l++
  XP_023874761.1  36 MQRFNDEQIKLLEIMFEEESRPESRTKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLLKASYDTLASKFESLKRENQLLLLQLQK 126
                     579********************************************************************************99988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MLAKEKVCII IKKKKCALIA IESSHAMASK RKNKNMQRFN DEQIKLLEIM FEEESRPESR  60
TKQKLANELG LHPRQVATWF QNRRARLKTK QIEREYSLLK ASYDTLASKF ESLKRENQLL  120
LLQLQKLKDM LDKQHGKNGI SDSNSVKGDS TSESKEKPSI LSESVNHNIN MFIGDANCED  180
AECTEEETGM LNIAEPIDDS STSSEDWCSF LDQSSGNSQW WE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RRARLKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-36HD-ZIP family protein