PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023874967.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 236aa    MW: 25666.3 Da    PI: 9.1814
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023874967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.4e-41421411100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lr +Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+++l++el+
  XP_023874967.1  42 PCAACKLLRSRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQQQIHSLQVELN 136
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023874967.1 137 SVRTE 141
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MSRDRERLDE TSKKIKRETD ATSQMGRRHL LGPSGTLNTI TPCAACKLLR SRCAEECPFS  60
PYFSPHEPHK FAAVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANLRL RDPVYGCMGA  120
ISALQQQIHS LQVELNSVRT EILKYKYREA TSNIISSSPA DLVPFGAVSI AAPQRTLRPP  180
PPTPPPPPPP PPPPVLSSPP IVVTSLSSSS STSFYIPPTS TTSYSSILSG NVSYFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-83LBD family protein