PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023875033.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 213aa    MW: 23171.5 Da    PI: 8.0435
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023875033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56.1e-40181181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l
  XP_023875033.1  18 PCGACKFLRRKCATDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 112
                     7*************************99******************************************************************* PP

          DUF260  95 allkee 100
                      ++k++
  XP_023875033.1 113 LQVKAQ 118
                     999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MASGAGNNGT TATATGSPCG ACKFLRRKCA TDCIFAPYFC SEQGPARFAA IHKVFGASNV  60
SKLLLHVPVH DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVACLQA QLLQVKAQLA  120
QSLIDSRNIE NQWSGNNVAG VPMVPTYPTY MNPISPQSSL ESIDHSNDGM YMQEIQSCRE  180
NCSVQPCSKK RPYGNDLGQL GELQALALRM MRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-52LBD family protein