PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023875194.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 241aa    MW: 27618.2 Da    PI: 6.6509
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023875194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.51.5e-2789170286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y++++e
  XP_023875194.1  89 WVQDETRSLISLRREMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 170
                     ********************************************************************84...556899***998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MYLSEKPRPI DFYKEEGARD MMIEVVSNGG GGGGDLPPHH APQPHPHAHA HSHHQHQQMI  60
LGDSSGGDED HEVEVEVEVK APKKRAETWV QDETRSLISL RREMDGLFNT SKSNKHLWEQ  120
ISSKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILRDRSKNA  180
QYKSPTPPKV DTYMQFSDKG IEDAGISFGP VEGMEIFDCL SLIYILCFFL SYLLDFILST  240
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.34e-83Trihelix family protein