PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875196.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 266aa MW: 30789.1 Da PI: 4.9445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W+ ++ g+ R++k+c++rw++yl XP_023875196.1 14 KGAWSVEEDNKLRSYIQRFGHWNWRELPKFAGLSRCGKSCRLRWLNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	50.9	3.6e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ + XP_023875196.1 67 RGNYTEEEEFMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111 899*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MVRAPFYDKN GLKKGAWSVE EDNKLRSYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWLNY 60 LQPNVKRGNY TEEEEFMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKRTMKNP 120 TALKMKMLSN EAYQHDADIA RKTETDSSVS NSPSFQIQES SQLPQETSSS DFSYLSFDNA 180 PLSGINWTTE DSLATLETLE QSFSDFWTEP FILDNTYVQN NYPESLADGG FSASQSCYNE 240 GIDSIYEAMQ EVENYQRINE DPYLVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	3e-55	MYB family protein