PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875303.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 400aa MW: 46258.3 Da PI: 8.9558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k F+++ +L H+r H XP_023875303.1 113 FQCCLCFKEFKSRKSLSGHMRYH 135 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MENYNHDRFE WNDELSEENN GLQIILFPDE PEPIQVEQSF IGLPIQQQSF GKHKCNFCQR 60 KFSSGQALGG HKRIHSTKLQ SKKFKYKVDH APSSSEKGDT IETDIVNRDI GKFQCCLCFK 120 EFKSRKSLSG HMRYHPNRNW KGIRPPQPEL ALTSPILMLP EQDKDDLPRW TKTAKRGRGN 180 LVDSGRDLDP VIVAADGLIS LAQDKDEYRA FEHVAKRKRM MEEPQLKKKR NLKIADQESV 240 DVEYEWRDFE QGKKDKIIRE LQEVEHDIAT IDNMLAGKKM EKRNWESKVR AFESQIQKKI 300 LKKLKVYKCS TCARTFSTFQ ALGGHRSSHT KHKKPQAIEP SYATKGKEYA TTTGQVAESR 360 EDGQTFGATE SLSLREEANQ TQTSRKVLDF DLNEPFFMED

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MENYNHDRFE WNDELSEENN GLQIILFPDE PEPIQVEQSF IGLPIQQQSF GKHKCNFCQR  60
KFSSGQALGG HKRIHSTKLQ SKKFKYKVDH APSSSEKGDT IETDIVNRDI GKFQCCLCFK  120
EFKSRKSLSG HMRYHPNRNW KGIRPPQPEL ALTSPILMLP EQDKDDLPRW TKTAKRGRGN  180
LVDSGRDLDP VIVAADGLIS LAQDKDEYRA FEHVAKRKRM MEEPQLKKKR NLKIADQESV  240
DVEYEWRDFE QGKKDKIIRE LQEVEHDIAT IDNMLAGKKM EKRNWESKVR AFESQIQKKI  300
LKKLKVYKCS TCARTFSTFQ ALGGHRSSHT KHKKPQAIEP SYATKGKEYA TTTGQVAESR  360
EDGQTFGATE SLSLREEANQ TQTSRKVLDF DLNEPFFMED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	230	KRKRMMEEPQLKKKR
2	216	256	KRKRMMEEPQLKKKRNLKIADQESVDVEYEWRDFEQGKKDK
3	227	256	KKKRNLKIADQESVDVEYEWRDFEQGKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-22	C2H2 family protein