PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023875660.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 818aa    MW: 89680.1 Da    PI: 6.79
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023875660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.71.3e-1014568172374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae++ +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+  l+   ++ + + pp++ ++ +++ ++ a+k+fsevsP+++f ++
  XP_023875660.1 456 LDQLYKAAECIGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALQLLLLM--NNPVTSPPPRSPTPFDVIFKMGAYKVFSEVSPLIQFVNF 548
                     679*************************************************98..4444456777777899*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.. 189
                     t+Nqa+lea++  +r+Hi+Dfdi+ G+QW++++q+L  R++g+psl+iT+++sp++++  el  ++e+L++fA+e+g++fe +v+  + l++   
  XP_023875660.1 549 TCNQALLEALSDVDRIHIVDFDIGFGAQWASFMQELPVRNRGAPSLKITAFASPSTHHPVELVLMRENLTQFANEIGISFELEVVNFDCLDQTsy 643
                     ************************************************************************************97777776633 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l  Lr  ++Ea+aVn+ +   +  +++++l+s    +L++vk+lsPk++v  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k
  XP_023875660.1 644 SLPILRAAENEAVAVNFPI--WSSSNQPAALPS----ILRFVKQLSPKIMVSLDRGCDRTDLPFPQHVLQALQSYINLLESLDAV-NVTSDAVNK 731
                     556799999********99..555567888888....*********************************************665.579****** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er+ll+++i++ v  + +       +l  W+  + +aGF+pv +s+++++qa++++++++++g++ve+++ slvl+W++r+L+s+SaWr
  XP_023875660.1 732 IERFLLQPKIESTVLGRLRG----PDKLPLWKTLFASAGFSPVIFSNFTETQAECVVKRTPVRGFHVEKRQSSLVLCWQRRELISASAWR 817
                     ***************98888....99***************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MKKHQKKKSE STPLESMRGM PFQLQGKGVF EIASFTPICS WNSNNKKEEL LDFANNNFNS  60
NNHNNTNNNN EPSSVLHMRR SPSPPTSAST LSSSFGGGGS TDNTAGGGGG VAATLPTDPS  120
PGPDPTRKDE WASELQPITS GLTGGGERCG LGGLEDWETM LSETAASPSQ DHSLLRLIAG  180
DVDDSSFGLK QLLQSGNNSN TNPLDLDGNA GLGIVDQGPG VFDPIIGGGN VNASINNHNP  240
NLAYPASGFS NYNNNCNGRI GGGTTIVPSS SGVLNCKVSS VGLNSNNNNC FSSNNSLPLP  300
VTLPPGVIYQ QQHQHQQFEV PDEKPQILNP QMLMNQQQQQ SQHPQSPNFF LPLPFAQQEQ  360
HLPQPQPKRQ NSGGLDPITQ IPKPPFVDPG HEFLLRKHQQ LQPQHIGFSP GVQFVPQHLQ  420
QKPLMVPNQK MGPGEELAQH HHQQQQQQQQ QQLALLDQLY KAAECIGTGN FSHAQGILAR  480
LNHQLSPVGK PLHRAAFYFK EALQLLLLMN NPVTSPPPRS PTPFDVIFKM GAYKVFSEVS  540
PLIQFVNFTC NQALLEALSD VDRIHIVDFD IGFGAQWASF MQELPVRNRG APSLKITAFA  600
SPSTHHPVEL VLMRENLTQF ANEIGISFEL EVVNFDCLDQ TSYSLPILRA AENEAVAVNF  660
PIWSSSNQPA ALPSILRFVK QLSPKIMVSL DRGCDRTDLP FPQHVLQALQ SYINLLESLD  720
AVNVTSDAVN KIERFLLQPK IESTVLGRLR GPDKLPLWKT LFASAGFSPV IFSNFTETQA  780
ECVVKRTPVR GFHVEKRQSS LVLCWQRREL ISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein