PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023875672.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 351aa MW: 38666.2 Da PI: 5.1329

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023875672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.2	1.9e-27	47	142	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r r++ + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ ++l XP_023875672.1 47 RWTRQEILVLIQGKRVAETRARQRGrsaglpfgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESFWVMRNDL 141 8****************9997533567777777*******************************************9999999999998 PP trihelix 86 e 86 + XP_023875672.1 142 R 142 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MLMMALEQQL SLAQKPVDGE ADGVTNGVEA ARPTSFVDGD KTPRLPRWTR QEILVLIQGK 60 RVAETRARQR GRSAGLPFGS GQVEPKWASV SSYCKRHGVN RGPVQCRKRW SNLAGDYKKI 120 KEWESQVKEE TESFWVMRND LRRERKLPGF FDKEVYDILD SGSGGAPETS IPGLSLALAA 180 PGSAAEDTEA DAGVLFDSGR TAAAEDGLFS DFEQDESGRS RTPEKEAPPV PKEVPAPTPI 240 SEKQYQPVLR SCQGQGTTSE KQPASNPEIG STSQEGRKRK RLAIEEDEET VSLQNQLVDV 300 LEKNAKMLSA QLESQNVNFQ QDREQRKDDV SSLIGVLNKL ADALGRIADK L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MLMMALEQQL SLAQKPVDGE ADGVTNGVEA ARPTSFVDGD KTPRLPRWTR QEILVLIQGK  60
RVAETRARQR GRSAGLPFGS GQVEPKWASV SSYCKRHGVN RGPVQCRKRW SNLAGDYKKI  120
KEWESQVKEE TESFWVMRND LRRERKLPGF FDKEVYDILD SGSGGAPETS IPGLSLALAA  180
PGSAAEDTEA DAGVLFDSGR TAAAEDGLFS DFEQDESGRS RTPEKEAPPV PKEVPAPTPI  240
SEKQYQPVLR SCQGQGTTSE KQPASNPEIG STSQEGRKRK RLAIEEDEET VSLQNQLVDV  300
LEKNAKMLSA QLESQNVNFQ QDREQRKDDV SSLIGVLNKL ADALGRIADK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-112	Trihelix family protein