PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876341.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 657aa MW: 74256.3 Da PI: 6.1155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	404	447	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+e++k+Lq XP_023876341.1 404 VAERKRRKKLNDRLYALRALVPKiS------KLDRASILGDAIEFVKELQ 447 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MDLCFCLFFS FVACSIFLLF SLLCSVKRGL GSKRKYCYLP GNMNIIMQNL MERLRPLVSV 60 KGWDYCVLWK LSEDQRFIEW MDCCCAGTDN TQNAGEELLF PVSTVLPCRD TMFQHPRTKA 120 CDLVAQLPSS MPLDSGIYAQ ALISNQPSWL NFSNNTESAV YKETVGTRVL IPLPGGVIEL 180 FASKQVAEDR NVIDLITAQC NISLQQQQQD LINSSNMSNS FSSNVNAMRT EFHSKLILVD 240 GQYQKDPNSH FQPPVSPATP LENMNVQYDI SVDRIRQCDS SMNFLQQFNY TPEDSTKSDI 300 YYEGAVHNSF ISDKPTNPFK SSAENGHREI DILQQSMMNN SSNMHMQFME PLSNKEQQGN 360 DKDSIKPETG RTDSISDCSD QFDDEDDAKY RRRTGKGPQS KNLVAERKRR KKLNDRLYAL 420 RALVPKISKL DRASILGDAI EFVKELQKQA KELQDELEEH SDDEVGRNTI PNIGNHQNVQ 480 PEILTTNGMI LGPKTEHEKP SNGIHEGGSG NGNALKQNQD SDSISDKAQQ MEVQVEVAQI 540 DGNEFFVKVF CEHKPGGFVR LMEALNSLGL EVTNANVTSF RGLVSNVFKV QKRDSEMVQA 600 DHVRDSLLEL TRNPSRGWPE MAKASENGDG TDFHHNHHHL HNHHASSYHH HLHHLHN

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MDLCFCLFFS FVACSIFLLF SLLCSVKRGL GSKRKYCYLP GNMNIIMQNL MERLRPLVSV  60
KGWDYCVLWK LSEDQRFIEW MDCCCAGTDN TQNAGEELLF PVSTVLPCRD TMFQHPRTKA  120
CDLVAQLPSS MPLDSGIYAQ ALISNQPSWL NFSNNTESAV YKETVGTRVL IPLPGGVIEL  180
FASKQVAEDR NVIDLITAQC NISLQQQQQD LINSSNMSNS FSSNVNAMRT EFHSKLILVD  240
GQYQKDPNSH FQPPVSPATP LENMNVQYDI SVDRIRQCDS SMNFLQQFNY TPEDSTKSDI  300
YYEGAVHNSF ISDKPTNPFK SSAENGHREI DILQQSMMNN SSNMHMQFME PLSNKEQQGN  360
DKDSIKPETG RTDSISDCSD QFDDEDDAKY RRRTGKGPQS KNLVAERKRR KKLNDRLYAL  420
RALVPKISKL DRASILGDAI EFVKELQKQA KELQDELEEH SDDEVGRNTI PNIGNHQNVQ  480
PEILTTNGMI LGPKTEHEKP SNGIHEGGSG NGNALKQNQD SDSISDKAQQ MEVQVEVAQI  540
DGNEFFVKVF CEHKPGGFVR LMEALNSLGL EVTNANVTSF RGLVSNVFKV QKRDSEMVQA  600
DHVRDSLLEL TRNPSRGWPE MAKASENGDG TDFHHNHHHL HNHHASSYHH HLHHLHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	412	RRRTGKGPQSKNLVAERKRRKK
2	406	413	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-148	bHLH family protein