PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876386.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 347aa MW: 39746.2 Da PI: 6.1267

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s XP_023876386.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	24.5	1.1e-09	122	191	10	79
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+lqqe+ +L++++++ ++++R + e + s++eL++ e++L + ++++ ++K+ ll +++++ XP_023876386.1 122 VNSDIEELQQEIGRLQQQLQMAEEQIRVYEPEPTKITSIEELESCEKNLVDTMTRVMQRKEYLLSNHLST 191 567899***********************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 RRIEDVFTRF INLPDQEREQ SLHPTEKGRH FDIQNKEHLL RTLQQLRSEN DIALQIANPT 120 AVNSDIEELQ QEIGRLQQQL QMAEEQIRVY EPEPTKITSI EELESCEKNL VDTMTRVMQR 180 KEYLLSNHLS TYDPSSLQQG IAASFENEVV NWMPDGGHNH GHIFDASTSL SQLRELSSTV 240 YDPFSQGTSS NTDPRSMGTN PSEGNFTSWS QAYNSTGHQH QQQHHHHSTA LLSPTLFPHI 300 QHGMVGPDIS EMMRQEQVEI PLNGSHVQVD NEVANYDSKV HQLNNMQ

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVFTRF INLPDQEREQ SLHPTEKGRH FDIQNKEHLL RTLQQLRSEN DIALQIANPT  120
AVNSDIEELQ QEIGRLQQQL QMAEEQIRVY EPEPTKITSI EELESCEKNL VDTMTRVMQR  180
KEYLLSNHLS TYDPSSLQQG IAASFENEVV NWMPDGGHNH GHIFDASTSL SQLRELSSTV  240
YDPFSQGTSS NTDPRSMGTN PSEGNFTSWS QAYNSTGHQH QQQHHHHSTA LLSPTLFPHI  300
QHGMVGPDIS EMMRQEQVEI PLNGSHVQVD NEVANYDSKV HQLNNMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-124	MIKC_MADS family protein