PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876466.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

SRS

Protein Properties

Length: 399aa MW: 41785.7 Da PI: 8.3529

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.1	1.9e-67	174	334	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t++CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq ++ a+ a +s +++ +k++r +++++++s+t++s+++++ XP_023876466.1 174 SSTTTCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMAGATGVAAGSSGSTSGAKKPRLI-ASQTTTTSHTSTSNTTPP 267 57889*******************************************99999988888888899999999975.88899999****** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ XP_023876466.1 268 RSFDTSSshqdvsfkdaLPGQVRAPAVFKCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVEN 334 *999*******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MWSSGSNTTR PLNYGLATPT QTDMPMVGLR DVFVVATPAS SFHHNLNHHH HHHHHHDQSN 60 MLSDPHSQFN SSNPATALGV GVGVGVIPLL TASPCAPQNL ALDDDTSSMF SNRNRSGGGI 120 GGGGIQFWQN QQQQQQQQQQ HAHYFKKPAI LEHGGGGNLM QSGGGIGGSN TTSSSTTTCQ 180 DCGNQAKKDC THRRCRTCCK SRGYDCATHV KSTWVPAARR RERQLMAGAT GVAAGSSGST 240 SGAKKPRLIA SQTTTTSHTS TSNTTPPRSF DTSSSHQDVS FKDALPGQVR APAVFKCVRV 300 TAVEDGEDEF AYQAVVKIGG HVFKGFLYDQ GVENNSNREG YPNISELHLG GGGGGNSNGG 360 NGGRNGASSS SPMLDPTDVY AASGGGGLLG GSSYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MWSSGSNTTR PLNYGLATPT QTDMPMVGLR DVFVVATPAS SFHHNLNHHH HHHHHHDQSN  60
MLSDPHSQFN SSNPATALGV GVGVGVIPLL TASPCAPQNL ALDDDTSSMF SNRNRSGGGI  120
GGGGIQFWQN QQQQQQQQQQ HAHYFKKPAI LEHGGGGNLM QSGGGIGGSN TTSSSTTTCQ  180
DCGNQAKKDC THRRCRTCCK SRGYDCATHV KSTWVPAARR RERQLMAGAT GVAAGSSGST  240
SGAKKPRLIA SQTTTTSHTS TSNTTPPRSF DTSSSHQDVS FKDALPGQVR APAVFKCVRV  300
TAVEDGEDEF AYQAVVKIGG HVFKGFLYDQ GVENNSNREG YPNISELHLG GGGGGNSNGG  360
NGGRNGASSS SPMLDPTDVY AASGGGGLLG GSSYGNPIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-67	SRS family protein