PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023876505.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27795.2 Da    PI: 9.908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023876505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.4e-301058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+iifss+g+lyey+
  XP_023876505.1 10 WIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIIFSSRGRLYEYA 58
                    69**********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGKIEIKW IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIIFSS RGRLYEYANN  60
SPSKPREELY LYLAVSQAAV NAALVREEDR LQRPVYFTSR AFRGAEERCP QMEKLAFTLM  120
TAARKLKPYF QVNGSYECKN ERMKKYLEEV KGRIGSLQVK FIQILREENE CADQLAKAAS  180
AEHMLVPNQV LSFVQVSSLI DDGATMQEIG SKSNWTMSLV SYLRNGMLLN KKDATRKLKV  240
QAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-35MIKC_MADS family protein