PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876649.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 597aa MW: 64806.9 Da PI: 7.9681

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.5	6.9e-17	543	575	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++C+ +Tp WRrgpdg +tLCnaCGl+y+k XP_023876649.1 543 CHSCNRAETPEWRRGPDGARTLCNACGLHYAKL 575 ******************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MRTAFRSRRA ELWNTEARTS YGCSEEQDQF DSLSAWHLLW CMFWSGFEDS GPGACSTLLD 60 SPHRGPRVWM DTPGPDRTGR LHRSRCRIGR VGESAELVNT SCTGRYLDVD KVKREDEMAY 120 MNRVSGAAQT LPAVTAASPT VYHPLGPPPP YSHAPSQHVN AWSTGPIETS SPHDSRRPSD 180 DEQDGPKHIT RQSLPSLSEA LGVDGQTPFP TSATAALLPP PPSAPAHTSR TQLAAIASPS 240 PSLKRGYGMD APRGTTHAAY GIAGGQHTAH SQNQPESLPS QAPPPAPSSQ PPVEGMSQSY 300 PSVTDRLPVH APALQSAARP SAPAANFVHA QSSAAEYEQP PTQPRGAMAP PNLPYGYTPY 360 ASRHALPVTN GSGAGPLYQP STSYPPPSAP SWKHDNMQSK FEGREYGESV KCHLDLYDLG 420 TALREIASTS SITSDFARRY DDQLQQPGRS GPILQSLPGL VEVDDMISKS RVQLESLLRI 480 RDFVVDQRAL YEQEAADQRQ QKLLVDQSQA DFEYMQDGGD GKSRLAASDA KKRRGRAAPP 540 GRCHSCNRAE TPEWRRGPDG ARTLCNACGL HYAKLTRKQQ GTKQSNAVGT SNLRPKE

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MRTAFRSRRA ELWNTEARTS YGCSEEQDQF DSLSAWHLLW CMFWSGFEDS GPGACSTLLD  60
SPHRGPRVWM DTPGPDRTGR LHRSRCRIGR VGESAELVNT SCTGRYLDVD KVKREDEMAY  120
MNRVSGAAQT LPAVTAASPT VYHPLGPPPP YSHAPSQHVN AWSTGPIETS SPHDSRRPSD  180
DEQDGPKHIT RQSLPSLSEA LGVDGQTPFP TSATAALLPP PPSAPAHTSR TQLAAIASPS  240
PSLKRGYGMD APRGTTHAAY GIAGGQHTAH SQNQPESLPS QAPPPAPSSQ PPVEGMSQSY  300
PSVTDRLPVH APALQSAARP SAPAANFVHA QSSAAEYEQP PTQPRGAMAP PNLPYGYTPY  360
ASRHALPVTN GSGAGPLYQP STSYPPPSAP SWKHDNMQSK FEGREYGESV KCHLDLYDLG  420
TALREIASTS SITSDFARRY DDQLQQPGRS GPILQSLPGL VEVDDMISKS RVQLESLLRI  480
RDFVVDQRAL YEQEAADQRQ QKLLVDQSQA DFEYMQDGGD GKSRLAASDA KKRRGRAAPP  540
GRCHSCNRAE TPEWRRGPDG ARTLCNACGL HYAKLTRKQQ GTKQSNAVGT SNLRPKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18380.1	4e-09	GATA family protein