PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876728.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 367aa MW: 41184.8 Da PI: 10.4934

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.2e-15	11	92	1	86
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aLi ++++ + + rg+l + We+v+ + ++s++qC++k+e+l+kry+ +k+ + + +s++++f l+ XP_023876728.1 11 CWTHDETIALISSFNDKWLSRSgsRGSLSASEWEAVATDVT----SKSSTQCRHKMEKLRKRYRSEKQKHNHH--SFVSSWVLFPLLD 92 8************99976654489********996....689*******************97..56668**9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MSTPRRVPPP CWTHDETIAL ISSFNDKWLS RSGSRGSLSA SEWEAVATDV TSKSSTQCRH 60 KMEKLRKRYR SEKQKHNHHS FVSSWVLFPL LDDIEARSSS SFSSFPSPVP PKKKKIAQTN 120 DNSDSVPGFG NGISIKTLSD RNSISQALTA KSFSKVGGSF NADREFYRKS RGGSGVESLV 180 GQNLVAPQEI RSRSYSTVTD SCSSKPDFDE NVGGFPVRTL GERNLVPPGF EQKNNSVKLG 240 EKFSPEFKHK HRMDYAIDKR GGNSVNSRIS PKNSNFELKD RNVVRKKREV VGSFAAVVSS 300 IKMLGEAYVK VETMKMEMAM EIEKMRMEME VKRNEVILES HKLAVEAFLN AMFDRKKKKV 360 KVVSVDS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MSTPRRVPPP CWTHDETIAL ISSFNDKWLS RSGSRGSLSA SEWEAVATDV TSKSSTQCRH  60
KMEKLRKRYR SEKQKHNHHS FVSSWVLFPL LDDIEARSSS SFSSFPSPVP PKKKKIAQTN  120
DNSDSVPGFG NGISIKTLSD RNSISQALTA KSFSKVGGSF NADREFYRKS RGGSGVESLV  180
GQNLVAPQEI RSRSYSTVTD SCSSKPDFDE NVGGFPVRTL GERNLVPPGF EQKNNSVKLG  240
EKFSPEFKHK HRMDYAIDKR GGNSVNSRIS PKNSNFELKD RNVVRKKREV VGSFAAVVSS  300
IKMLGEAYVK VETMKMEMAM EIEKMRMEME VKRNEVILES HKLAVEAFLN AMFDRKKKKV  360
KVVSVDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-21	Trihelix family protein