PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876743.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

RAV

Protein Properties

Length: 342aa MW: 38734.6 Da PI: 7.7877

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.9	1.8e-11	44	91	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W A+I+ + +r++lg+f t++eAa a++ a+ kl+ XP_023876743.1 44 SKFKGVV-PQQNGHWGAQIYA------NhRRIWLGTFKTEKEAAMAYDSAAIKLR 91 799*6.666899999......44******99**********98 PP
2	B3	91.6	5.7e-29	166	262	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv++++rlv+pkkfa ++ gg+ +e ++l+++d+ rsW+++++y+k+s+++v+t+GW++Fvk+++Lk++D++ F XP_023876743.1 166 FQKELTPSDVGSLNRLVIPKKFAVKYfpcisesaednegGGN-KEAVQLIFYDRMMRSWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKANDTISF 259 99******************************99996555.4779********************************************** PP EE- CS B3 83 kld 85 +l XP_023876743.1 260 YLC 262 *75 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MEDDMLSMIS NGGVNATAED SDSSSTTYPF PESKRARHGS NASSKFKGVV PQQNGHWGAQ 60 IYANHRRIWL GTFKTEKEAA MAYDSAAIKL RSGDSQRNFP WTDITVEEPS FQNLYSTEAV 120 LNMIKEGSYQ SKFEDFLRTH SHIVETVDLN LGRVQSKGGL SCKQLFQKEL TPSDVGSLNR 180 LVIPKKFAVK YFPCISESAE DNEGGGNKEA VQLIFYDRMM RSWKFRYCYW KSSQSFVFTR 240 GWNRFVKEKK LKANDTISFY LCECQEAAND ARSFNMIDVN SSDNCGGLVE QANQYVGIQL 300 DLKLGVSPRI DHKLGEEKEL KGPKPTHETE KPCFRLFGVQ II

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MEDDMLSMIS NGGVNATAED SDSSSTTYPF PESKRARHGS NASSKFKGVV PQQNGHWGAQ  60
IYANHRRIWL GTFKTEKEAA MAYDSAAIKL RSGDSQRNFP WTDITVEEPS FQNLYSTEAV  120
LNMIKEGSYQ SKFEDFLRTH SHIVETVDLN LGRVQSKGGL SCKQLFQKEL TPSDVGSLNR  180
LVIPKKFAVK YFPCISESAE DNEGGGNKEA VQLIFYDRMM RSWKFRYCYW KSSQSFVFTR  240
GWNRFVKEKK LKANDTISFY LCECQEAAND ARSFNMIDVN SSDNCGGLVE QANQYVGIQL  300
DLKLGVSPRI DHKLGEEKEL KGPKPTHETE KPCFRLFGVQ II

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-110	RAV family protein