PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876792.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 522aa MW: 56661.8 Da PI: 6.6756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	328	375	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023876792.1 328 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 375 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MENEFFLNPA LHFEPPSASI MATWHSLSAA MDIQIQGTEQ SQDCFFSSNA DQSVHFDSAL 60 SSMVSSPAAS ANNVSNDSFV IRELIGKLGN IGNNSANNSC YSTPLNSPPK QLSLPMTDHL 120 VKENLPSLGK SMPLNSCVAE FSADPGFAER AARFSRFGSR SFNGRTGQLG LNNTEFQKKP 180 NLLMGNGNQN LPRVCSSPSL KAQGSQTGAQ ENKNSSPLQD SQEESTISEQ NPNGDSNSRK 240 RKAVSRGKKE PPSSSPSANA TKVGEANDNS KAKRSKPNED NGNGNGNGPV KAEDETQKSS 300 ADKTNAKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK 360 ALMLDEIINY VQSLQRQVEF LSMKLASVNT RMDASMDSLF SKDIFQSNNN LPHPIFPLDS 420 SASAFYGQQP QQNPALHSNI SNGTVTQCSV DPIDTALCQS LSMQLLPLNG FSESVAQYPN 480 FGEDDLQTIV QMGLGQNPSR ETALQPQSFH GSNQIPHMKV EQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MENEFFLNPA LHFEPPSASI MATWHSLSAA MDIQIQGTEQ SQDCFFSSNA DQSVHFDSAL  60
SSMVSSPAAS ANNVSNDSFV IRELIGKLGN IGNNSANNSC YSTPLNSPPK QLSLPMTDHL  120
VKENLPSLGK SMPLNSCVAE FSADPGFAER AARFSRFGSR SFNGRTGQLG LNNTEFQKKP  180
NLLMGNGNQN LPRVCSSPSL KAQGSQTGAQ ENKNSSPLQD SQEESTISEQ NPNGDSNSRK  240
RKAVSRGKKE PPSSSPSANA TKVGEANDNS KAKRSKPNED NGNGNGNGPV KAEDETQKSS  300
ADKTNAKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK  360
ALMLDEIINY VQSLQRQVEF LSMKLASVNT RMDASMDSLF SKDIFQSNNN LPHPIFPLDS  420
SASAFYGQQP QQNPALHSNI SNGTVTQCSV DPIDTALCQS LSMQLLPLNG FSESVAQYPN  480
FGEDDLQTIV QMGLGQNPSR ETALQPQSFH GSNQIPHMKV EQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-95	bHLH family protein