PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023876823.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 446aa    MW: 49721.6 Da    PI: 5.7677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023876823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.73.2e-88434391373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     l++lLl+cA a++++d +laq++++ l++ as+ gdp+qRla+ f++AL +r +r +++ ++   +s+ ++    + +++++l  ++++ P+++f
  XP_023876823.1  43 LEKLLLHCASALETNDVTLAQQVMWVLNNVASSVGDPNQRLASWFLRALISRASRVCPTAMNFNGSSTIQR----RLMSVTELagYVDLIPWHRF 133
                     5799***************************************************8888776655555443....3333333355********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ + N+aIl+a++g  rvHi+Df++++++QWp+L+++La+RpegppslRiT+ +s  ++    + ++ee+g rL +fA+  +vpfef+v+    
  XP_023876823.1 134 GFCASNSAILNAIQGFPRVHILDFSVTHCMQWPTLIDTLAKRPEGPPSLRITVPSSRPPVpplLNVSTEEVGLRLGNFAKFRDVPFEFRVFdnss 228
                     *****************************************************9998877999999***************************** PP

            GRAS 182 ..................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFle 255
                                        ++ l+ l++++L+++ +Eal++n+++ l +l de+  +++    rd++L+++k+l+P+++vvv++++d++++s+  
  XP_023876823.1 229 spstlgevvkrkesasfhFESLLAHLNPSTLNLRGDEALVINCQHWLRYLSDEQNGSPHgasLRDTFLDIIKGLNPQIIVVVDEDSDLSASSLTS 323
                     ******9888888777644556777899999********************999888777779******************************** PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                     r++ +++y +  fd+le+ lp+es +r+ +E   +g +i+n+++ eg++r+er e+  k  +r++++G  ++p+ e+++k++k ll +++  g+ 
  XP_023876823.1 324 RITTCFNYLWIPFDALETFLPKESCQRMEYESD-IGHKIENIISFEGFQRIERLESGIKLCQRMTNSGWISIPFCEETVKEVKDLLDEHA-SGWG 416
                     *********************************.********************************************************.8899 PP

            GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                     +++e++ lvl+Wk+++ v+++aW
  XP_023876823.1 417 MKKEEDMLVLTWKGHNSVFATAW 439
                     99********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MKAEQRGNTS VSLQNPTLFN NTLHSPLSGA LNGCLGSLDG ACLEKLLLHC ASALETNDVT  60
LAQQVMWVLN NVASSVGDPN QRLASWFLRA LISRASRVCP TAMNFNGSST IQRRLMSVTE  120
LAGYVDLIPW HRFGFCASNS AILNAIQGFP RVHILDFSVT HCMQWPTLID TLAKRPEGPP  180
SLRITVPSSR PPVPPLLNVS TEEVGLRLGN FAKFRDVPFE FRVFDNSSSP STLGEVVKRK  240
ESASFHFESL LAHLNPSTLN LRGDEALVIN CQHWLRYLSD EQNGSPHGAS LRDTFLDIIK  300
GLNPQIIVVV DEDSDLSASS LTSRITTCFN YLWIPFDALE TFLPKESCQR MEYESDIGHK  360
IENIISFEGF QRIERLESGI KLCQRMTNSG WISIPFCEET VKEVKDLLDE HASGWGMKKE  420
EDMLVLTWKG HNSVFATAWI PNGLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein