PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876869.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 23413 Da PI: 10.2856

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.5	2.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_023876869.1 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP
2	K-box	70.5	5.3e-24	79	169	8	97
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++e ++++ +++ + L+k++e L+ ++R+llG++Le + + eLqq+e+qLe+sl+kiR++Kn+l++eqie+l+++ek + een +Lr+k XP_023876869.1 79 NgKSEGTNQHVKEDTQSLEKKLELLEVSKRKLLGDGLELCPIDELQQVENQLERSLTKIRARKNQLYREQIEQLREQEKFQLEENAKLRAK 169 24778889*********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60 CMSKTIERYQ KRSKDQGLNG KSEGTNQHVK EDTQSLEKKL ELLEVSKRKL LGDGLELCPI 120 DELQQVENQL ERSLTKIRAR KNQLYREQIE QLREQEKFQL EENAKLRAKC GLPPLHPSSK 180 QREVNRRSLD VETELFIGPP KR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	5e-70	MIKC_MADS family protein