PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023876915.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 611aa MW: 67782.2 Da PI: 6.7602

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023876915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	442	488	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq XP_023876915.1 442 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINELQ 488 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MKIEVGLGGG VWNDEDKTMV AAVLGTRAYD YLISSSVSNE NLLMAVGSDE NLQNKLSDLV 60 DRPSALNFSW NYAIFWQLSR SKSGDWVLGW GDGSCREPRE GEESQAMQIL NHRLEDEALQ 120 KMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH 180 VWLSDILKSQ SDYCVRSFLA KSAGIQTIVL VPTDVGVFEL GSVRSVGESL DLLQSIRSSF 240 STHPSPGRIN SVPVLSVINE KKDENTPFTN LGMVDRVEGI PKIFGQELNL GNLGRPHYRE 300 KLAIRKTEER PWEAYPNGSK IAYPSPRNGI HGSSWGHIHG VKQGGPAEIY GPHATNNLQE 360 LVNGVREEFR LNNYQPQKQV QMQIDFSGAT SRPSVISRPI SAESEHSDVE ASCKEERATA 420 ADERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA 480 ISYINELQAK LKIMETEREN LGSSSRDASA LEGNPNTENL YRVPDVDIHA ARDEVIVKVS 540 CPLDSHPASR VIQAFKEAQV TVVESKLSAA NDTVLHTFVI KSQGSDQLTK EKLIAAFSRE 600 SNSLQALSSV G

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MKIEVGLGGG VWNDEDKTMV AAVLGTRAYD YLISSSVSNE NLLMAVGSDE NLQNKLSDLV  60
DRPSALNFSW NYAIFWQLSR SKSGDWVLGW GDGSCREPRE GEESQAMQIL NHRLEDEALQ  120
KMRKRVLQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCFASGKH  180
VWLSDILKSQ SDYCVRSFLA KSAGIQTIVL VPTDVGVFEL GSVRSVGESL DLLQSIRSSF  240
STHPSPGRIN SVPVLSVINE KKDENTPFTN LGMVDRVEGI PKIFGQELNL GNLGRPHYRE  300
KLAIRKTEER PWEAYPNGSK IAYPSPRNGI HGSSWGHIHG VKQGGPAEIY GPHATNNLQE  360
LVNGVREEFR LNNYQPQKQV QMQIDFSGAT SRPSVISRPI SAESEHSDVE ASCKEERATA  420
ADERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  480
ISYINELQAK LKIMETEREN LGSSSRDASA LEGNPNTENL YRVPDVDIHA ARDEVIVKVS  540
CPLDSHPASR VIQAFKEAQV TVVESKLSAA NDTVLHTFVI KSQGSDQLTK EKLIAAFSRE  600
SNSLQALSSV G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	432	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein