PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023877052.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 367aa MW: 41786.5 Da PI: 5.0634

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023877052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_023877052.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_023877052.1 67 RGRFAFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 899999**************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF AFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDISSILS SSLYNPSQMN NISRLFGVEP FVNPELLRLA SSIMSSQRDQ 180 NPNLLLQNLQ ENQLCQNQIP QLVQVQSNQV HAPIQENIDP TTCTTLSTAC VPFHNEAQPQ 240 LVDSNVDQFP SNFNNFSSSN CQLTEWQTNG MPSNFTDEDY APLPSYNYYC SDQTFVDPSE 300 TSTFQSNNSN QNFSFASVLS TPSSSPTPLN SNSTYINSSS TEDERESYCS NMLKFEIQDL 360 LDVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF AFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDISSILS SSLYNPSQMN NISRLFGVEP FVNPELLRLA SSIMSSQRDQ  180
NPNLLLQNLQ ENQLCQNQIP QLVQVQSNQV HAPIQENIDP TTCTTLSTAC VPFHNEAQPQ  240
LVDSNVDQFP SNFNNFSSSN CQLTEWQTNG MPSNFTDEDY APLPSYNYYC SDQTFVDPSE  300
TSTFQSNNSN QNFSFASVLS TPSSSPTPLN SNSTYINSSS TEDERESYCS NMLKFEIQDL  360
LDVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-106	MYB family protein