PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023877303.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23897.6 Da    PI: 5.3388
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023877303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.1e-2660110151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     k+i++ks+r++tfskR++gi+KKA+ELSvL++++v+++++s+tg +y++ +
  XP_023877303.1  60 KFIQDKSRRHITFSKRKAGIMKKAYELSVLTGTQVLLLVVSETGLVYTFTT 110
                     79***********************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSAEILNQDP SHHDDRDDLD NPNGAAESRG VKRQRASAAA DDEDDDDDKP GRERRKIEIK  60
FIQDKSRRHI TFSKRKAGIM KKAYELSVLT GTQVLLLVVS ETGLVYTFTT PKLQPLVTKP  120
EGKNLIQACL NAPEPADSNG VDGESAVESP EEQHAPAPPM PQAMPAQNIP RNQAPQSYMT  180
ADQQQALQYQ AYLQQQQQTQ GAYPMPPQGN MHQQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.21e-08MIKC_MADS family protein