PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023877319.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

GATA

Protein Properties

Length: 924aa MW: 99881.7 Da PI: 7.3712

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023877319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59	6.1e-19	676	709	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC t +TplWRr+p+g++ LCnaCGl+ +++g+ XP_023877319.1 676 CTNCFTQTTPLWRRNPEGHP-LCNACGLFLKLHGV 709 ******************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence
MSRATPLRQR GALDDLRSSV ALSDDSVDVA TLSDITVDSP RHVRVPTIFN DSSSGSSSAI 60 HSLTSASTLS TLEGKLDLSP SDITARRGLS KPFFDQWGDD TVAEQSESPE EMQKNDPLGT 120 QIWKLYHKTK GQLPNSERLE NLSWRMMSMN LRRKELERQQ GLAARPHTQN TPSGIAQLRR 180 SSEQTGNTDS QNEQMDLDDF LAPSSIASPG DDFPVLTASE LAPSSTSTVS AIPIKQQQRL 240 QNDESALARA SAPSANALDP RRDSQEFAYV QRHIRKTSID ERRPPKRRAE ASPQVMMPRD 300 PVDDTTLQSY SLDAMPVHSQ QQAHHPTLPF NLQTFDLDLD PIMNSAGPLQ QQFSFSPVGS 360 PMFGGDTLNQ MYSMPPSTAN HQNPSGLRST GGSALPSNVS TPQPVLENSE QMFFRNTTPA 420 QTSMPNFQQQ AHHASQPSMH QHPQQQQQFM FSSNAEPMYS PISSSLPSHN HFQQPTFHMP 480 GHLDPTQVMP QDFQHPNGMM APRHDQMFTF GGDSDNEDDD MMHFNDGNAM MHQTFSPMED 540 PTMEMSGGFQ WDSNLSNQFN PTAARYPGGP PRKGVTIGSA ELIPTTQGWE QGSLGRGHGS 600 TASVSDIRNR GGDPRTKKIP RTTSTPNTVR MATGMFSIHA QPSPASPNDS GFNSTAPSRP 660 ESPRLGGENN GVPTTCTNCF TQTTPLWRRN PEGHPLCNAC GLFLKLHGVV RPLSLKTDVI 720 KKRNRGSGNS MPVGASRSKK GTSRKNSVAQ ASVTTPTSGK GSNHEADSPK SHTGSAGTGT 780 SATTPTSSGA PEKPMKTVVA IAPGPPKPST QTPSLGPTRT VAPRRGRRQS KVSNAAGSND 840 VEMQTVEEAS PGKAVSKKAK DAHGQMQQPL TSSSMVPQPN NVSMQAAMGP QGGGSAQSQD 900 LSLTGIPSGM VQGPQEWEWL TMSL

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence

MSRATPLRQR GALDDLRSSV ALSDDSVDVA TLSDITVDSP RHVRVPTIFN DSSSGSSSAI  60
HSLTSASTLS TLEGKLDLSP SDITARRGLS KPFFDQWGDD TVAEQSESPE EMQKNDPLGT  120
QIWKLYHKTK GQLPNSERLE NLSWRMMSMN LRRKELERQQ GLAARPHTQN TPSGIAQLRR  180
SSEQTGNTDS QNEQMDLDDF LAPSSIASPG DDFPVLTASE LAPSSTSTVS AIPIKQQQRL  240
QNDESALARA SAPSANALDP RRDSQEFAYV QRHIRKTSID ERRPPKRRAE ASPQVMMPRD  300
PVDDTTLQSY SLDAMPVHSQ QQAHHPTLPF NLQTFDLDLD PIMNSAGPLQ QQFSFSPVGS  360
PMFGGDTLNQ MYSMPPSTAN HQNPSGLRST GGSALPSNVS TPQPVLENSE QMFFRNTTPA  420
QTSMPNFQQQ AHHASQPSMH QHPQQQQQFM FSSNAEPMYS PISSSLPSHN HFQQPTFHMP  480
GHLDPTQVMP QDFQHPNGMM APRHDQMFTF GGDSDNEDDD MMHFNDGNAM MHQTFSPMED  540
PTMEMSGGFQ WDSNLSNQFN PTAARYPGGP PRKGVTIGSA ELIPTTQGWE QGSLGRGHGS  600
TASVSDIRNR GGDPRTKKIP RTTSTPNTVR MATGMFSIHA QPSPASPNDS GFNSTAPSRP  660
ESPRLGGENN GVPTTCTNCF TQTTPLWRRN PEGHPLCNAC GLFLKLHGVV RPLSLKTDVI  720
KKRNRGSGNS MPVGASRSKK GTSRKNSVAQ ASVTTPTSGK GSNHEADSPK SHTGSAGTGT  780
SATTPTSSGA PEKPMKTVVA IAPGPPKPST QTPSLGPTRT VAPRRGRRQS KVSNAAGSND  840
VEMQTVEEAS PGKAVSKKAK DAHGQMQQPL TSSSMVPQPN NVSMQAAMGP QGGGSAQSQD  900
LSLTGIPSGM VQGPQEWEWL TMSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	288	RPPKRR
2	824	860	RRGRRQSKVSNAAGSNDVEMQTVEEASPGKAVSKKAK