PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878004.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 184aa MW: 20977.1 Da PI: 9.9479

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl XP_023878004.1 13 KGAWTKQEDQKLIDYIQKHGEGCWRSLPEAAGLLRCGKSCRLRWVNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	54.5	2.7e-17	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_023878004.1 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MRKPCCEKKE TNKGAWTKQE DQKLIDYIQK HGEGCWRSLP EAAGLLRCGK SCRLRWVNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LKRKLLRKGI 120 DPNNHRLGLI RPTKSFVSNN HSCKEVNSQA DNFPVLNSST SGPVSNISSF PDLNLDLTIG 180 LPIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-79	MYB family protein