PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878006.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 198aa MW: 22539.6 Da PI: 9.8205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++++G g+W++ ++ g++R++k+c++rw +yl XP_023878006.1 13 KGAWSQEEDQKLIAYIQKHGEGCWRSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.9e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_023878006.1 66 RGNFEEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNHWNSH 110 899*****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MRKPCCKKEE TNKGAWSQEE DQKLIAYIQK HGEGCWRSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGNFE EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNHWNSH IRKKLTQMGI 120 NPNKPHKLGG TASFTGISFF SKNQAPKPVN VHRDDNQILG FESGVESNKT SCVPDLNLDL 180 TLSTPTSTLV EERQQPNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-72	MYB family protein