PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023878109.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family Trihelix
Protein Properties Length: 550aa    MW: 62172.3 Da    PI: 6.1846
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023878109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.63e-2749132186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ e+laL+++r +m+  +r+++lk+plWeevs+k++  g++r++k+Ckek+en+ k++k++keg+ ++  ++ +t+++fdql+
  XP_023878109.1  49 RWPRPETLALLKIRLDMDGVFRDSNLKGPLWEEVSRKLAGLGYNRNAKKCKEKFENVYKYHKRTKEGRTGK--PEGKTYRFFDQLQ 132
                     8********************************************************************95..55568******98 PP
2trihelix98.26.9e-31375460187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi +r++++++++++  k+p W ++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf++l+a
  XP_023878109.1 375 RWPKAEVEALIGLRTSVDRNYQENGPKGPMWGDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKTR-PEDSKTCPYFQKLDA 460
                     8********************************************************************97.99**********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MLRDSEEDTV MVGADHEGDK DGVIGWNSSE EDKAKSEEGG DRITSGGNRW PRPETLALLK  60
IRLDMDGVFR DSNLKGPLWE EVSRKLAGLG YNRNAKKCKE KFENVYKYHK RTKEGRTGKP  120
EGKTYRFFDQ LQALENKHQP SRAMASSVSK TTIPSTANPT IISHNGVSKS TTVPSTTNPT  180
IISQSVVPPI PNPTIPPLQA PKPAVPRNPL QSTISGILFS GNTSTSSSTA SEEELKGRCK  240
KRRKWKDFFK SLAKEVIEKQ EELQLKFLEA IEKHENERIV REDSWRIQEM ARLNREHEML  300
VQERSTAAAK DAVVIAFLQK ISNGNNTNLQ SQPVPRLTPP PRLLSSETNS EIQKMDIVRF  360
ENNSTPSPTQ TSSSRWPKAE VEALIGLRTS VDRNYQENGP KGPMWGDISA GMRRLGYNRS  420
AKRCKEKWEN INKYFKKVKE SNKTRPEDSK TCPYFQKLDA LYKEKKKVES SANSSHDMNN  480
LMEPLMVQPE QQWPPQEDNN QQETAMEDIE NVEQNEEDDE NEAVDSEEED DDGGGHEVVI  540
NKPTSTDNGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-131Trihelix family protein