PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023878265.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 98aa    MW: 11277.3 Da    PI: 11.0017
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023878265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  XP_023878265.1  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                    79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSST  60
ESHSNIFFRL KEKKGGETQR GFLIISKKVG KSMIKDLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.46e-35MIKC_MADS family protein