PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878588.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 29239.2 Da PI: 9.8396

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_023878588.1 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 8***********************************************96 PP
2	K-box	100.7	2e-33	88	174	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s++ e+akLk+++e Lqr+q+h+ GedL+sLslkeLq+LeqqL+++lk+iR++Kn++++e+i++lqkk k+lqe+n++L kk++e XP_023878588.1 88 NGSWNLEHAKLKARMEVLQRNQKHFRGEDLDSLSLKELQSLEQQLDSALKHIRTRKNQVMHESISDLQKKDKALQEQNNSLAKKVKE 174 5789********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMERILERY ERYSYAERRL LANDLEPNGS WNLEHAKLKA RMEVLQRNQK HFRGEDLDSL 120 SLKELQSLEQ QLDSALKHIR TRKNQVMHES ISDLQKKDKA LQEQNNSLAK KVKEKEKEIA 180 QQEQLWEQQN HTLESSSVLP QPLQPPQPLQ PWNIGRSYQA SGYGREEETT PSQNQANTLL 240 PPWMLRHLNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	7e-73	MIKC_MADS family protein