PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023878936.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 553aa MW: 58902.6 Da PI: 10.0058

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023878936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	424	507	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC................................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.............................kapskKlsKaeiLekAveYIksLq 55 +r++h+ +E+ RR+riN+a+ e ++llPka+ +a + sKa+++e A eYI+ Lq XP_023878936.1 424 KRTSHKVAEQGRRNRINEALKEMQSLLPKAVvlkkeqsgsdaspdaeqradedskdtkedAAAKSNSSKAATVESANEYIRRLQ 507 7**************************999***********************7777777***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MVSPAGTPQY SMQPEFTIPG AYFSPLTSPM LHAQNGQSAP RHHLPQRHQH QQGYYTNSST 60 APSSNATSPV DHQSGDVDMA NDGIMLPDSA DGSLKKSARR KIATPRSLAV NARLRSSPIQ 120 KAQKRKPGKL STSAENLVSE AQRASKLRPD SEGLQSSSTF QGSSEDGSIS PEPLSESLMP 180 PPRRPTSGLP HSPLSATHSQ DVKPSGLGVA ATPKSILSLR NGQPGAVQAV QTPAEPGTLD 240 DFRLPEAAET QEPALPKINT RIIPAESDES TPRASARKTP KLGPLSTPSS ARPGSAVQSP 300 SLSGSPICGP LSGGGLAQKD KKADVKGVKN SKKRGSSGAN SAMVSPALRP RISPSIKPLL 360 PEGSKSQPEM QSSEHVTDLF VATLHSPTHA LLLASKSNYQ NLLEGNHLPG VNYPDSLSTG 420 LTSKRTSHKV AEQGRRNRIN EALKEMQSLL PKAVVLKKEQ SGSDASPDAE QRADEDSKDT 480 KEDAAAKSNS SKAATVESAN EYIRRLQREH GEKDMTMARL QRKMEELEQR LNSQSSTGAE 540 ESDTTPSVDQ TMR

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MVSPAGTPQY SMQPEFTIPG AYFSPLTSPM LHAQNGQSAP RHHLPQRHQH QQGYYTNSST  60
APSSNATSPV DHQSGDVDMA NDGIMLPDSA DGSLKKSARR KIATPRSLAV NARLRSSPIQ  120
KAQKRKPGKL STSAENLVSE AQRASKLRPD SEGLQSSSTF QGSSEDGSIS PEPLSESLMP  180
PPRRPTSGLP HSPLSATHSQ DVKPSGLGVA ATPKSILSLR NGQPGAVQAV QTPAEPGTLD  240
DFRLPEAAET QEPALPKINT RIIPAESDES TPRASARKTP KLGPLSTPSS ARPGSAVQSP  300
SLSGSPICGP LSGGGLAQKD KKADVKGVKN SKKRGSSGAN SAMVSPALRP RISPSIKPLL  360
PEGSKSQPEM QSSEHVTDLF VATLHSPTHA LLLASKSNYQ NLLEGNHLPG VNYPDSLSTG  420
LTSKRTSHKV AEQGRRNRIN EALKEMQSLL PKAVVLKKEQ SGSDASPDAE QRADEDSKDT  480
KEDAAAKSNS SKAATVESAN EYIRRLQREH GEKDMTMARL QRKMEELEQR LNSQSSTGAE  540
ESDTTPSVDQ TMR