PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023879976.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 867aa MW: 95271.1 Da PI: 4.4827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023879976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	659	696	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ eLr ++P+ +K s + L ++++Y+ Lq XP_023879976.1 659 RQQIQDRIKELRGIIPHG-----GKCSIDSLLDRTIKYMLFLQ 696 89*************8.....7999999*******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MGSVVKQTLK SLCCSEGWSY GIFWRFVQND SLLLTFEDAY YEKQVEAVID MLPQVHMMGE 60 GLIGQAAFTG KHRWMFSDAH GEKWDSIDSF ECQDIFQDDS GFLRQFSSGI KTIAVISVAP 120 QGVVQFGSTQ KVSERKEFLD QTKRLFQEME NIDELIPLEN AFSSLNNDIC DLNGLFGTLI 180 PSGNSHNGDL NAMLGDGSKE LTGEACSATF VNESCHSISG IHDDERMTPL LRDLGHPNNQ 240 LPKVGTEAQI LLSDTLNSQF QKAFLQATSS VSTRSSADSI LTSFEPLLVS ETRIQDSPNM 300 ITSKANALES CRNTASNVQE ESTFTSTFSG GGLIDLGKTI PDRSRNLMDG QHFCPSILET 360 QGELQETATS THRFAEEFKP DNFISEISKF CLLDDLAQWF SPSPEHRINE MASASSNDLQ 420 QSMGVTSASS CLIGDDVFSD FPIKRLGNSV QSCITTTLNS EGQENSTIMP GAENDLFDGL 480 GMDFGCGQSM ECWEDFIMPV VSAATDTRMS ECVSELDVGS MAGPRKGLFS ELGLQELLDG 540 ISSSNSFTKS SFEDQLSGSK RSRMDTSSVN SNQLQLASLA CSSGSMNIMQ PVCNLEKKNN 600 VPKKEFLPKS QVGLWIDDSY SINVGNTGLA RPQKPEEPTK ASKKRARPGE STRPRPKDRQ 660 QIQDRIKELR GIIPHGGKCS IDSLLDRTIK YMLFLQSVTK YADKLKQSDE PKLMGQETGV 720 VLKDNSMGDG GGGVTWAFEV GGQTMVCPII IEDHNPPGQM LIEMLCEEQG FFLEITDVIR 780 SFGLNILKGV MEARDSKIWA RFVVEANSQV TRMDIFWSLV HLLKQTTTTG NDTTDQPGDA 840 IYGGVPQLDS YQKPTLPPPI SMAETLG

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MGSVVKQTLK SLCCSEGWSY GIFWRFVQND SLLLTFEDAY YEKQVEAVID MLPQVHMMGE  60
GLIGQAAFTG KHRWMFSDAH GEKWDSIDSF ECQDIFQDDS GFLRQFSSGI KTIAVISVAP  120
QGVVQFGSTQ KVSERKEFLD QTKRLFQEME NIDELIPLEN AFSSLNNDIC DLNGLFGTLI  180
PSGNSHNGDL NAMLGDGSKE LTGEACSATF VNESCHSISG IHDDERMTPL LRDLGHPNNQ  240
LPKVGTEAQI LLSDTLNSQF QKAFLQATSS VSTRSSADSI LTSFEPLLVS ETRIQDSPNM  300
ITSKANALES CRNTASNVQE ESTFTSTFSG GGLIDLGKTI PDRSRNLMDG QHFCPSILET  360
QGELQETATS THRFAEEFKP DNFISEISKF CLLDDLAQWF SPSPEHRINE MASASSNDLQ  420
QSMGVTSASS CLIGDDVFSD FPIKRLGNSV QSCITTTLNS EGQENSTIMP GAENDLFDGL  480
GMDFGCGQSM ECWEDFIMPV VSAATDTRMS ECVSELDVGS MAGPRKGLFS ELGLQELLDG  540
ISSSNSFTKS SFEDQLSGSK RSRMDTSSVN SNQLQLASLA CSSGSMNIMQ PVCNLEKKNN  600
VPKKEFLPKS QVGLWIDDSY SINVGNTGLA RPQKPEEPTK ASKKRARPGE STRPRPKDRQ  660
QIQDRIKELR GIIPHGGKCS IDSLLDRTIK YMLFLQSVTK YADKLKQSDE PKLMGQETGV  720
VLKDNSMGDG GGGVTWAFEV GGQTMVCPII IEDHNPPGQM LIEMLCEEQG FFLEITDVIR  780
SFGLNILKGV MEARDSKIWA RFVVEANSQV TRMDIFWSLV HLLKQTTTTG NDTTDQPGDA  840
IYGGVPQLDS YQKPTLPPPI SMAETLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-55	bHLH family protein