PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880231.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 149aa MW: 17194 Da PI: 9.7765

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	8.9e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+++++fs gkl+ey+s XP_023880231.1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSTLCDAEISLMVFSAAGKLFEYAS 59 68***********************************************86 PP
2	K-box	24.8	9.1e-10	94	144	20	70
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +a L+ke+e+ +e+R++ Ge+L ++++eLq+L+++L +l+++ ++K XP_023880231.1 94 SYAMLNKETEEKTHELRNIRGEELPGMDIEELQKLKKELVVGLSRVIETKV 144 5788999999999*********************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence
MTRRRIQIKK IDNTTARQVT FSKRRRGLFK KAFELSTLCD AEISLMVFSA AGKLFEYASS 60 SMQLVIERRN LHPENLGKMD QLSLELQLLE NGTSYAMLNK ETEEKTHELR NIRGEELPGM 120 DIEELQKLKK ELVVGLSRVI ETKVSTTYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-63	MIKC_MADS family protein