PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023880687.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17723.9 Da    PI: 10.4773
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023880687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.2e-201563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+nk   + tf+kRrng+  KA EL +LC+a+vavi+fs+++k+y++
  XP_023880687.1 15 KEIQNKGAMYCTFTKRRNGLCSKARELHTLCGAQVAVIVFSPKNKMYTF 63
                    6799********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MVRPKGMGRS KIEIKEIQNK GAMYCTFTKR RNGLCSKARE LHTLCGAQVA VIVFSPKNKM  60
YTFGEPSVDS VVNRFLHEQQ QQRRRPLNRG GQKKKKKKTI PFLSDECIEG FELHELKYCT  120
ALMEEFVKKL EERLADVVYR RVQMKDLISL IK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18398RRRPLNRGGQKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-23M-type_MADS family protein