PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880701.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 394aa MW: 42913.4 Da PI: 9.8725

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66	8e-21	79	170	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W+ev++ + ++ ++++qC++k+e+l+kry+ + +++++ s+ s++++f++++a XP_023880701.1 79 CWSHDETVALIDSYREKWYSLRRGNLKATHWQEVADSVarrcSAASPPKTAVQCRHKMEKLRKRYRTELQRARSMpVSRFISSWVHFKRMDA 170 7*******************************9999666566777899********************977999********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MASAAASSSS PVDTAATTPP PIPSSPPTAV PLPLPLPLPA PPAAQIQAQP QTPTQTPIQA 60 LPSAQPQPTT ASRRLPPPCW SHDETVALID SYREKWYSLR RGNLKATHWQ EVADSVARRC 120 SAASPPKTAV QCRHKMEKLR KRYRTELQRA RSMPVSRFIS SWVHFKRMDA MEKGPSAKPR 180 VNDSDSDEND NNNDEGLDVE NDEEEDQDLY EEFKNGGANM RHMSKFYRNN GIGGSGGGGG 240 GGGGGGGGGS GGGSGFRIRI PSGVSVAHLG SKFYPKVEPK FNSNPNPSSS SGVNYGARVM 300 RECNTAVRSG LGKRERERDP VAEMVSAIKV LGDGFVRVEQ MKMEMAREIE GMRMEMEMKR 360 TEMILESQQR IVEAFAKAVS EKKKKPKRIP SPES

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MASAAASSSS PVDTAATTPP PIPSSPPTAV PLPLPLPLPA PPAAQIQAQP QTPTQTPIQA  60
LPSAQPQPTT ASRRLPPPCW SHDETVALID SYREKWYSLR RGNLKATHWQ EVADSVARRC  120
SAASPPKTAV QCRHKMEKLR KRYRTELQRA RSMPVSRFIS SWVHFKRMDA MEKGPSAKPR  180
VNDSDSDEND NNNDEGLDVE NDEEEDQDLY EEFKNGGANM RHMSKFYRNN GIGGSGGGGG  240
GGGGGGGGGS GGGSGFRIRI PSGVSVAHLG SKFYPKVEPK FNSNPNPSSS SGVNYGARVM  300
RECNTAVRSG LGKRERERDP VAEMVSAIKV LGDGFVRVEQ MKMEMAREIE GMRMEMEMKR  360
TEMILESQQR IVEAFAKAVS EKKKKPKRIP SPES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-77	Trihelix family protein