PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880884.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 27864.8 Da PI: 4.6754

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	37	91	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le++Fe+++ + +++ eLA++lgL+ rqV +WFqN+Ra++k XP_023880884.1 37 KNKRRFSDEQIKSLETMFESESRLEPKKKLELARELGLQPRQVAIWFQNKRARWK 91 67889*************************************************9 PP
2	HD-ZIP_I/II	121.2	5.3e-39	38	129	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+k+LE++Fe+e++Lep++K elareLglqprqva+WFqn+RAR+k+k+lE+dy+ L+ +y++l++ e+L+ke+++L +l++ XP_023880884.1 38 NKRRFSDEQIKSLETMFESESRLEPKKKLELARELGLQPRQVAIWFQNKRARWKSKNLERDYSILRGNYNNLASTFEALKKEKHALVVQLQK 129 79*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MLDHSEYSSS AAAGAAAESF GCMDMDSLTT SRKKKNKNKR RFSDEQIKSL ETMFESESRL 60 EPKKKLELAR ELGLQPRQVA IWFQNKRARW KSKNLERDYS ILRGNYNNLA STFEALKKEK 120 HALVVQLQKL NDLMQRPQEE RQCCSEGLAA NSIQGELDNG DTTKCESETK PSLSTERSEH 180 GASVLSDEDS NIKAEYFTLE DEPSLLNMVE PADGSLTSPE DWSSLNSDGL FDESNSNNQW 240 WDFWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-67	HD-ZIP family protein