PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023880894.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 497aa MW: 55626.6 Da PI: 5.8509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023880894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	325	370	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L XP_023880894.1 325 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 370 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MEELIISPSS SSSLVSLPQE TPPTLQQRLQ FIVQSQQEWW AYAIFWQTTN ASDNGHHLFL 60 SWADGHFQGT KDTSPKLSHI NTHYPISMLH SERRKFMRDI HSSILSTTTN DDNNLDHMSI 120 NADVTDTEWF YVMSLTRSFS VGDGVLGKSF GTNSLVWLTG GHELQFYNCE RAKEAQMHGI 180 ETLVCIPTSC GVLELGSQDI IRENWGLVQQ VKSFFGSDLI GLVPKQANQS SPSPIQFLDR 240 NISFADIGII AGIQEDDDSQ EEHRKGVVLE GSAKKQCVKL GGQSSYVDSE HSDSDCPLIA 300 VNNIEKRTPK KRGRKPGLGR DTPLNHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL 360 SDAVSYINEL KTKIDELESQ LQRESKKVKL EMTDTMDNQS TTTSVDQTKP NNTNSGSVLE 420 VEVKMVGPDA MIRLQSENVN YPGARLMGAL RDLEFQVHHA SMSCVNELML QDVVVKVPEG 480 LRGEEALKSA LLGRLEQ

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MEELIISPSS SSSLVSLPQE TPPTLQQRLQ FIVQSQQEWW AYAIFWQTTN ASDNGHHLFL  60
SWADGHFQGT KDTSPKLSHI NTHYPISMLH SERRKFMRDI HSSILSTTTN DDNNLDHMSI  120
NADVTDTEWF YVMSLTRSFS VGDGVLGKSF GTNSLVWLTG GHELQFYNCE RAKEAQMHGI  180
ETLVCIPTSC GVLELGSQDI IRENWGLVQQ VKSFFGSDLI GLVPKQANQS SPSPIQFLDR  240
NISFADIGII AGIQEDDDSQ EEHRKGVVLE GSAKKQCVKL GGQSSYVDSE HSDSDCPLIA  300
VNNIEKRTPK KRGRKPGLGR DTPLNHVEAE RQRREKLNHR FYALRAVVPN VSRMDKASLL  360
SDAVSYINEL KTKIDELESQ LQRESKKVKL EMTDTMDNQS TTTSVDQTKP NNTNSGSVLE  420
VEVKMVGPDA MIRLQSENVN YPGARLMGAL RDLEFQVHHA SMSCVNELML QDVVVKVPEG  480
LRGEEALKSA LLGRLEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	6e-85	bHLH family protein