PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881005.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 266aa MW: 30677.1 Da PI: 5.2212

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W+ ++ g+ R++k+c++rw++yl XP_023881005.1 14 KGAWSVEEDNKLRSYIQRFGHWNWRELPKFAGLSRCGKSCRLRWLNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	48	3e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ + XP_023881005.1 67 RGNYREEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111 78899***************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MVRAPFYDKN GLKKGAWSVE EDNKLRSYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWLNY 60 LQPDVKRGNY REEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKCTKKNP 120 TISKMKMLSN EACQHDVDIA RKTETDSSVS SSPSYQVQES SQLPLEPSSS EFSYLSFDNA 180 PLSGINWTAE NSLATLETLE QSFSDFWTEP FVLDNTYIQN NYPESLANGG FSASQSCYNE 240 GVDSIYEAMQ EIENYQRINE DPYLVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-52	MYB family protein