PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023881040.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 452aa MW: 49423.2 Da PI: 8.0506

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023881040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	2e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtG+C yG++C+++H+ XP_023881040.1 48 PGEPNCLYYLRTGQCGYGSNCRYNHP 73 5789*********************8 PP
2	zf-CCCH	36.4	8.9e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_023881040.1 92 QPDCGYFLKTGTCKYGSTCKYHHPR 116 789********************96 PP
3	zf-CCCH	38	2.9e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f++rtG Ck+G CkF+H+p XP_023881040.1 139 SCPFYMRTGSCKFGVACKFHHPP 161 6********************97 PP
4	zf-CCCH	39.7	8e-13	292	317	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_023881040.1 292 DQPECRYFMNNGTCKYGSDCKFHHPK 317 689*********************96 PP
5	zf-CCCH	35.3	1.9e-11	335	359	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G CkyG++CkF H+ XP_023881040.1 335 GQAVCSYYSMYGLCKYGPTCKFDHP 359 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MPDNRQVQKN AMPNHSANNI EEAFWRLKLN DNQEGGAAAQ SAAYPDRPGE PNCLYYLRTG 60 QCGYGSNCRY NHPSYASQGA LYSGELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG 120 AGPVSFNILG LPMRQEEKSC PFYMRTGSCK FGVACKFHHP PPASLGPVLP VPGHVAFGSM 180 TPTVVPSSGL PYVGGFPAWS LPRMPYVSSP RWQDPQSYPS VPFSPSQGIV SAQGWNTYNT 240 YMGSMSPMSP TSSASVLGSS FVYNSKNLGE SGSSGQVHLS STPALILPER PDQPECRYFM 300 NNGTCKYGSD CKFHHPKERI TQSIATQPGL PLRPGQAVCS YYSMYGLCKY GPTCKFDHPV 360 VAPPYNYTLS LPALSMLDSP LFNYPRSLST AHSSETSPSK SSRFPDWVQK HDATNNEHEN 420 SDTKTPEDSP EQAAASPRPI PTSTEPLHDQ SG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MPDNRQVQKN AMPNHSANNI EEAFWRLKLN DNQEGGAAAQ SAAYPDRPGE PNCLYYLRTG  60
QCGYGSNCRY NHPSYASQGA LYSGELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG  120
AGPVSFNILG LPMRQEEKSC PFYMRTGSCK FGVACKFHHP PPASLGPVLP VPGHVAFGSM  180
TPTVVPSSGL PYVGGFPAWS LPRMPYVSSP RWQDPQSYPS VPFSPSQGIV SAQGWNTYNT  240
YMGSMSPMSP TSSASVLGSS FVYNSKNLGE SGSSGQVHLS STPALILPER PDQPECRYFM  300
NNGTCKYGSD CKFHHPKERI TQSIATQPGL PLRPGQAVCS YYSMYGLCKY GPTCKFDHPV  360
VAPPYNYTLS LPALSMLDSP LFNYPRSLST AHSSETSPSK SSRFPDWVQK HDATNNEHEN  420
SDTKTPEDSP EQAAASPRPI PTSTEPLHDQ SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-111	C3H family protein